Publication


Book Chapter









E. Dehghan, N. Kuo, A. Deguet, Y. Le, E. Armour, E. C. Burdette, D. Y. Song, G. Fichtinger, J. L. Prince, J. Lee, "Ultrasound-fluoroscopy registration for intraoperative dynamic dosimetry in prostate brachytherapy," in Abdomen and Thoracic Imaging: An Engineering & Clinical Perspective, Ayman S. El-Baz, Luca Saba, Jasjit Suri (Eds.), New York, NY, Springer, 2014, ch. 23, pp. 587-622.

Journals
    1. G. Kim, A. N. Viswanathan, R. Bhatia, Y. Landman, E. J. Schmidt, J. Lee, "Dual convolution-transformer UNet (DCT-UNet) for organs at risk and clinical target volume segmentation in MRI for cervical cancer brachytherapy," Physics in Medicine and Biology, Vol. 69, pp. 215014, 2024

    2. K. Sheikh, B. L. Daniel, M. Roumeliotis, J. Lee, W. T. Hrinivich, T. Benkert, H. Bhat, R. T. Seethamraju, A. N. Viswanathan, E. J. Schmidt, "Inversion-recovery ultrashort-echo-time (IR-UTE) MRI-based detection of radiation dose heterogeneity in gynecologic cancer patients treated with HDR brachytherapy," Radiation Oncology, Vol. 19, p. 105, 2024

    3. L. Su, E. Huang, D. A. Miles, R. Farjam, I. Marsh, Q. Li, J. A. Moore, T. R. McNutt, K. Ding, K. K-H. Wang, A. Robinson, G. Kuri, R. Seabrease, D. P. Adam, R. Oglesby, B. Shen, B. Wu, J. Lee, X. Jia, S. Han-Oh, "Commissioning and validation of a single photon beam model in RayStation for multiple matched Elekta Linacs," Journal of Applied Clinical Medical Physics, p. e14485, 2024

    4. H. Hooshangnejad, D. China, Y. Huang, W. Zbijewski, A. Uneri, T. McNutt, J. Lee, K. Ding, "XIOSIS: X-ray-based intra-operative image-guided platform for oncology smart material delivery," IEEE Transactions on Medical Imaging. Vol. 43, No. 9, pp. 3176-3187, 2024

    5. W. T. Hrinivich, M. Bhattacharya, L. Mekki, T. McNutt, X. Jia, H. Li, D. Y. Song, J. Lee, "Clinical VMAT machine parameter optimization for localized prostate cancer using deep reinforcement learning," Medical Physics. Vol. 51, pp. 3972-3984, 2024

    6. R. Pemmaraju, G. Kim, L. Mekki, D. Y. Song, L. Lee, "Cascaded cross-attention transformers and convolutional neural networks for multi-organ segmentation in male pelvic CT," Journal of Medical Imaging, Vol. 11, Issue 2, p. 024009, 2024

    7. L. Mekki, S. Acharya, M. Ladra, J. Lee, "Deep learning segmentation of organs-at-risk with integration into clinical workflow for pediatric brain radiotherapy, Journal of Applied Clinical Medical Physics, Vol. 25, p. e14310, 2024

    8. P. Vagdargi, A. Uneri, X. Zhang, C. K. Jones, P. Wu, R. Han, A. Sisniega-Crespo, J. Lee, P. Helm, M. Luciano, W. S. Anderson, G. D. Hager, J. H. Siewerdsen, "Real-time 3D video reconstruction for guidance of transventricular neurosurgery," IEEE Transactions on Medical Robotics and Bionics, Vol. 5, Issue 3, pp. 669-682, 2023

    9. X. Huang, H. Hooshangnejad, D. China, Z. Feng, J. Lee, M. A. Bell, K. Ding K, "Ultrasound imaging with flexible array transducer for pancreatic cancer radiation therapy," Cancers, Vol. 15, pp. 3294, 2023

    10. X. Zhang, A. Sisniega, W. B. Zbijewski, J. Lee, C. K. Jones, P. Wu, R. Han, A. Uneri, P. Vagdargi, P. A. Helm, M. Luciano, W. S. Anderson, J. H. Siewerdsen, "Combining physics-based models with deep learning image synthesis and uncertainty in intraoperative cone-beam CT," Medical Physics, Vol. 50, No. 5, pp. 2607-2624, 2023 (Farrington Daniels Best Paper Award)

    11. T. Ji, Z. Feng, E. Sun, S. K. Ng, L. Su, Y. Zhang, D. Hang, S. Han-Oh, I. Iordachita, J. Lee, P. Kazanzides, M. A. Lediju Bell, J. Wong, K. Ding, "A phantom-based analysis for tracking intra-fraction pancreatic tumor motion by ultrasound imaging during radiation therapy," Frontiers in Oncology, Vol. 12, p. 996537, 2022

    12. F. Zabihollahy, A. N. Viswanathan, E. J. Schmidt, J. Lee, "Fully automated segmentation of clinical target volume in cervical cancer from magnetic resonance imaging with convolutional neural network," Journal of Applied Clinical Medical Physics, pp. e13725, 2022

    13. R. Han, K. Jones, J. Lee, X. Zhang, P. Wu, P. Vagdargi, A. Uneri, P. A. Helm, M. Luciano, W. S. Anderson, J. H. Siewerdsen, "Joint synthesis and registration network for deformable MR-CBCT image registration for neurosurgical guidance," Physics in Medicine and Biology, Vol. 67, pp. 125008, 2022

    14. H. Hooshangnejad, S. Han-Oh, E. J. Shin, A. Narang, A. D. Rao, J. Lee, T. McNutt, C. Hu, J. Wong, K. Ding, "Demonstrating the benefits of corrective intra-operative feedback in improving the quality of duodenal hydrogel spacer placement," Medical Physics, Vol. 49, pp. 4794–4803, 2022

    15. H. Hooshangnejad, S. Youssefian, A. Narang, E. J. Shin, A. D. Rao, S. Han-Oh, T. McNutt, J. Lee, C. Hu, J. Wong, K. Ding, "Finite element based personalized simulation of duodenal hydrogel spacer: spacer location dependent duodenal sparing and a decision support system for spacer-enable pancreatic cancer radiation therapy," Frontiers in Oncology, Vol. 12, pp. 833231, 2022

    16. R. Han, C. K. Jones, J. Lee, P. Wu, P. Vagdargi, A. Uneri, P. A. Helm, M. Luciano, W. S. Anderson, J. H. Siewerdsen, "Deformable MR-CT image registration using an unsupervised, dual-channel network for neurosurgical guidance," Medical Image Analysis, Vol. 75, pp. 102292, 2022

    17. F. Zabihollahy, A. N. Viswanathan, E. J. Schmidt, M. Morcos, J. Lee, "Fully automated multi-organ segmentation of female pelvic magnetic resonance images with coarse-to-fine convolutional neural network," Medical Physics, Vol. 48, pp. 7028-7042, 2021

    18. C. Gui, X. Chen, K. Sheikh, L. Mathews, S. L. Lo, J. Lee, M. A. Khan, D. M. Sciubba, K. J. Redmond, "Radiomic modeling to predict risk of vertebral compression fracture after stereotactic body radiation therapy for spinal metastases," Journal of Neurosurgery: Spine, Vol. 36, No. 2, pp. 294-302, 2021

    19. X. Chen, K. Sheikh, E. Nakajima, C. T. Lin, J. Lee, C. Hu, R. K. Hales, P. M. Forde, J. Naidoo, K. R. Voong, "Radiation versus immune checkpoint inhibitor associated pneumonitis: distinct radiologic morphologies," The Oncologist, Vol. 26, pp. e1822-e1832, 2021

    20. P. Han, S. H. Lee, K. Noro, J. W. Haller, M. Nakatsugawa, S. Sugiyama, M. Bowers, P. Lakshminarayanan, J. Hoff, C. Friedes, C. Hu, T. R. McNutt, K. R. Voong, J. Lee*, R. K. Hales* (*co-senior authors), "Improving early identification of significant weight loss using clinical decision support system in lung cancer radiation therapy," JCO Clinical Cancer Informatics, Vol. 5, pp. 944-952, 2021

    21. T. Singh, J. Lee, M. Zahurak, H. J. Bae, T. Habtu, R. Hobbs, Y. Le, E. C. Burdette, D. Y. Song, "Superior post-implant dosimetry achieved using dynamic intraoperative dosimetry for permanent prostate brachytherapy," Practical Radiation Oncology, Vol. 11, pp. 264-271, 2021

    22. W. T. Hrinivich, J. Lee, "Artificial intelligence-based radiotherapy machine parameter optimization using reinforcement learning," Medical Physics, Vol. 47, No. 12, pp. 6140-6150, 2020

    23. S. Sultana, A. Robinson, D. Y. Song, J. Lee, "Automatic multi-organ segmentation in CT images using hierarchical convolutional neural network," Journal of Medical Imaging, Vol. 7, No. 5, p. 055001, 2020 (Selected as Featured Content)

    24. H. Yang, A. Carass, C. Zhao, J. Lee, J. L. Prince, Z. Xu, "Unsupervised MR-to-CT synthesis using structure-constrained CycleGAN," IEEE Transactions on Medical Imaging, Vol. 39, No. 12, pp. 4249-4261, 2020

    25. S. H. Lee, P. Han, R. K. Hales, K. R. Voong, K. Noro, S. Sugiyama, J. W. Haller, T. R. McNutt, J. Lee, "Multi-view radiomics and dosiomics analysis with machine learning for predicting acute-phase weight loss in lung cancer patients treated with radiotherapy," Physics in Medicine and Biology, Vol. 65, p.195015, 2020

    26. S. Sultana, D. Y. Song, J. Lee, "Deformable registration of PET/CT and ultrasound for disease-targeted focal prostate brachytherapy," Journal of Medical Imaging, Vol. 6, No. 3, p. 035003, 2019

    27. W. T. Hrinivich, M. Morcos, A. Viswanathan, J. Lee, "Automatic tandem and ring reconstruction using MRI for cervical cancer brachytherapy," Medical Physics, Vol. 46, Issue 10, pp. 4324-4332, 2019 (Editor's Choice)

    28. W. T. Hrinivich, S. Park, Y. Le, D. Y. Song, J. Lee, "Deformable registration of X-ray and MRI for post-implant dosimetry in low-dose-rate prostate brachytherapy," Medical Physics, Vol. 46, Issue 9, pp. 3961-3973, 2019

    29. K. Sheikh, S. H. Lee, Z. Cheng, P. Lakshminarayanan, L. Peng, P. Han, T. R. McNutt, H. Quon, J. Lee, "Predicting acute radiation induced xerostomia in head and neck cancer using MR and CT radiomics of parotid and submandibular glands," Radiation Oncology, Vol. 14, No. 131, pp. 1-11, 2019

    30. A. D. Rao, J. Lee, W. Fu, S. Nicholas, S. R. Alcorn, J. Moore, M. Ladra, M. Mahesh, S. Bartolac, S. A. Terezakis, "Precision of 2 low-dose abdomen/pelvis cone beam computed tomography protocols for alignment to bone and soft-tissue in pediatric patients receiving image guided radiation therapy," Practical Radiation Oncology, Vol. 9, Issue 3, pp. e307-e313, 2019

    31. Z. Cheng, M. Nakatsugawa, X. C. Zhou, C. Hu, S. Greco, A. P. Kiess, B. R. Page, S. R. Alcorn, J. Haller, K. Utsunomiya, S. Sugiyama, W. Fu, J. Wong, J. Lee, T. R. McNutt, H. Quon, "The utility of clinical decision support system (CDSS) in weight loss prediction following head and neck cancer radiotherapy," JCO Clinical Cancer Informatics, Vol. 3, pp. 1-11, 2019

    32. P. Han, P. Lakshminarayanan, W. Jiang, I. Shpitser, X. Hui, S. H. Lee, Z. Cheng, Y. Guo, R. Taylor, A. Siddiqui, M. Bowers, K. Sheikh, A. P. Kiess, B. Page, J. Lee, H. Quon, T. R. McNutt, "Dose/volume histogram patterns in salivary gland subvolumes influence xerostomia injury and recovery," Scientific Reports, Vol. 9, No. 1, p. 3616, 2019

    33. H. Quon, T. McNutt, J. Lee, M. Bowers, W. Jiang, P. Lakshminarayanan, Z. Cheng, P. Han, X. Hui, V. Shah, J. Moore, M. Nakatsugawa, S. Robertson, B. Page, A. Kiess, J. Wong, T. DeWeese, "Needs and challenges for radiation oncology in the era of precision medicine," International Journal of Radiation Oncology, Biology, Physics, Vol. 103, No. 4, pp. 809-817, 2018

    34. J. Lee, R. F. Hobbs, M. Zahurak, S. K. Ng, Z. Zhang, E. C. Burdette, T. L. DeWeese, D. Y. Song, "Phase II study of intraoperative dosimetry for prostate brachytherapy using Registered Ultrasound and Fluoroscopy (iRUF)," Brachytherapy, Vol. 17, Issue 6, pp. 858-865, 2018

    35. L. Peng, P. Huang, K. Sheikh, V. Parekh, B. Baker, T. Kirschbaum, F. Silvestri, J. Son, A. Robinson, E. Huang, H. Ames, J. Grimm, L. Chen, C. Shen, K. Redmond, M. Lim, J. Lee, M. Jacobs, L. Kleinberg, "Distinguishing true progression from radionecrosis after stereotactic radiotherapy for brain metastases with machine learning and radiomics," International Journal of Radiation Oncology, Biology, Physics, Vol. 102, Issue 4, pp. 1236-1243, 2018

    36. J. Woo, F. Xing, J. Lee, M. Stone, J. L. Prince, "A spatio-temporal atlas and statistical model of the tongue during speech from cine-MRI," Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, Vol. 6, Issue 5, pp. 520-531, 2018

    37. M. Stone, J. Woo, J. Lee, T. Poole, A. Seagraves, M. Chung, E. Kim, E. Murano, J. L. Prince, S. Blemker, "Structure and variability in tongue muscle anatomy," Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, Vol. 6, Issue 5, pp. 499-507, 2018

    38. R. Anderson, E. Armour, C. Beeckler, V. Briner, A. Choflet, A. Cox, A. N. Fader, M. N. Hannah, R. Hobbs, E. Huang, M. Kiely, J. Lee, M. Morcos, P. E. McMillan, D. Miller, S. K. Ng, R. Prasad, A. Souranis, R. Thomsen, T. L. DeWeese, A. N. Viswanathan, "Interventional radiation oncology (IRO): Transition of a magnetic resonance simulator to a brachytherapy suite," Brachytherapy, Vol. 17, Issue 3, pp. 587-596, 2018

    39. T. McNutt, S. Benedict, D. Low, K. Moore, I. Shpitser, W. Jiang, P. Lakshminarayanan, S. Cheng, P. Han, X. Hui, M. Nakatsugawa, J. Lee, J. Moore, S. Robertson, R. Taylor, B. Page, H. Quon, J. Wong, T. DeWeese, "Using big data analytics to advance precision radiation oncology," International Journal of Radiation Oncology, Biology, Physics, Vol. 101, Issue 2, pp. 285-291, 2018

    40. S. Park, R. Farah, S. M Shea, E. Tryggestad, R. Hales, J. Lee, "Simultaneous tumor and surrogate motion tracking with dynamic MRI for radiation therapy planning," Physics in Medicine and Biology, Vol. 63, pp. 025015, 2018

    41. D. L. Grimm, M. Stone, J. Woo, J. Lee, J. H. Hwang, G. E. Bedrosian, J. L. Prince, "The effects of palate features and glossectomy surgery on /s/ production," Journal of Speech, Language, and Hearing Research, Vol. 60, pp. 3417-3425, 2017

    42. P. Huang, S. Park, R. Yan, J. Lee, L. C. Chu, C. T. Lin, A. Hussien, J. Rathmell, B. Thomas, C. Chen, R. Hales, J. Steingrimsson, D. S. Ettinger, M. Brock, P. Hu, E. K. Fishman, E. Gabrielson, S. Lam, "Added value of computer-aided CT image features for early lung cancer diagnosis with small pulmonary nodules: a matched case-control study," Radiology, Vol. 286, No. 1, pp. 286-295, 2017

    43. J. Lee, O. Y. Mian, Y. Le, H. J. Bae, E. C. Burdette, T. L. DeWeese, J. L. Prince, D. Y. Song, "Intraoperative Registered Ultrasound and Fluoroscopy (iRUF) for dose calculation during prostate brachytherapy: improved accuracy compared to standard ultrasound-based dosimetry," Radiotherapy and Oncology, Vol. 124, Issue 1, pp. 61-67, 2017 (featured on cover)

    44. L. Su, I. Iordachita, Y. Zhang, J. Lee, S. K. Ng, J. Jackson, T. Hooker, J. Wong, J. M. Herman, H. T. Sen, P. Kazanzides, M. A. L. Bell, C. Yang, K. Ding, "Feasibility study of ultrasound imaging for stereotactic body radiation therapy with active breathing coordinator in pancreatic cancer," Journal of Applied Clinical Medical Physics, Vol. 18, No. 4, pp. 84-96, 2017

    45. S. Park, W. Plishker, H. Quon, J. Wong, R. Shekhar, J. Lee, "Deformable registration of CT and cone-beam CT with local intensity matching," Physics in Medicine and Biology, Vol. 62, No. 3, pp. 927-947, 2017

    46. M. Chen, A. Carass, A. Jog, J. Lee, S. Roy, J. L. Prince, "Cross contrast multi-channel image registration using image synthesis for MR brain images," Medical Image Analysis, Vol. 36, pp. 2-14, 2017

    47. G. Zaki, W. Plishker, W. Li, J. Lee, H. Quon, J. Wong, R. Shekhar, "The utility of cloud computing in analyzing GPU-accelerated deformable image registration of CT and CBCT images in head and neck cancer radiation therapy," Journal of Translational Engineering in Health and Medicine, Vol. 4, p. 4300311, 2016

    48. S. Park, T. McNutt, W. Plishker, G. Zaki, H. Quon, J. Wong, R. Shekhar, J. Lee, "Technical Note: SCUDA: A software platform for cumulative dose assessment," Medical Physics, Vol. 43, No. 10, pp. 5339-5346, 2016

    49. F. Xing, J. Woo, J. Lee, E. Z. Murano, M. Stone, J. L. Prince, "Analysis of 3D tongue motion from tagged and cine magnetic resonance images," Journal of Speech, Language, and Hearing Research, Vol. 59, No. 3, pp. 468-479, 2016

    50. J. Woo, J. Lee, E. Murano, F. Xing, M. Al-Talib, M. Stone, J. L. Prince, "A high-resolution atlas statistical model of the vocal tract from structural MRI", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, Vol. 3, Issue 1, pp. 47-60, 2015

    51. J. Lee, J. Woo, F. Xing, E. Murano, M. Stone, J. L. Prince, "Semi-automatic segmentation for 3D motion analysis of the tongue with dynamic MRI", Computerized Medical Imaging and Graphics, Vol. 38, Issue 8, pp. 714-724, 2014 (featured on cover)

    52. N. Kuo, E. Dehghan, A. Deguet, E. C. Burdette, G. Fichtinger, J. L. Prince, D. Y. Song, J. Lee, "An image-guidance system for dynamic dosimetry in prostate brachytherapy using ultrasound and fluoroscopy", Medical Physics, Vol. 41, No. 9, p. 091712, 2014

    53. E. Tryggestad, A. Flammang, R. Hales, J. Herman, J. Lee, T. McNutt, T. Roland, S. Shea, J. Wong, "4D tumor centroid tracking using orthogonal 2D dynamic MRI: implications for radiotherapy planning," Medical Physics, Vol. 40, Issue 9, pp.091712-1-12, 2013.

    54. E. Dehghan, J. Lee, P. Fallavollita, N. Kuo, A. Deguet, Y. Le, E. C. Burdette, D. Y. Song, J. L. Prince, G. Fichtinger, "Ultrasound-fluoroscopy registration for prostate brachytherapy dosimetry", Medical Image Analysis, Vol. 16, Issue 7, pp. 1347-1358, 2012.

    55. J. Lee, J. W. Stayman, Y. Otake, S. Schafer, W. Zbijewski, A. J. Khanna, J. L. Prince, J. H. Siewerdsen, "Volume-of-change cone-beam CT for image-guided surgery", Physics in Medicine and Biology, Vol. 57, No. 15, pp. 4969-4989, 2012 (PMB Editor's Choice,  Medical Physics Web).

    56. N. Kuo, A. Deguet, D. Y. Song, E. C. Burdette, J. L. Prince, J. Lee, "Automatic segmentation of radiographic fiducial and seeds from X-ray images in prostate brachytherapy", Medical Engineering and Physics, Vol. 34, Issue 1, pp.64-77, 2012.

    57. J. Lee, N. Kuo, A. Deguet, E. Dehghan, D. Y. Song, E. C. Burdette, J. L. Prince, "Intraoperative 3-D reconstruction of prostate brachytherapy implants with automatic pose correction", Physics in Medicine and Biology, Vol. 56, No. 15, pp.5011-5027, 2011.

    58. G. J. Gang*, J. Lee*, J. W. Stayman, D. Tward, W. Zbijewski, J. L. Prince, J. H. Siewerdsen, "Analysis of Fourier-domain task-based detectability index in tomosynthesis and cone-beam CT in relation to human observer performance", Medical Physics, Vol. 38, Issue 4, pp.1754-1768, 2011. *equal contribution.

    59. O. Sadowsky, J. Lee, E. G. Sutter, S. J. Wall, J. L. Prince, R. H. Taylor, "Hybrid cone-beam tomographic reconstruction: Incorporation of prior anatomical models to compensate for missing data", IEEE Trans. Medical Imaging, Vol. 30, No. 1, pp.69-83, 2011.

    60. J. Lee, C. Labat, A. K. Jain, D. Y. Song, E. C. Burdette, G. Fichtinger, J. L. Prince, "REDMAPS: Reduced-dimensionality matching for prostate brachytherapy seed reconstruction", IEEE Trans. Medical Imaging, Vol. 30, No. 1, pp.38-51, 2011.

    61. J. -H. Han, J. Lee, T. G. Lee, J. U. Kang, "Near infrared imaging of micro-structured polymer-metal surface pattern", Opto-Electronics Review, Vol. 18, No. 2, pp. 163-167, 2010.

    62. G. J. Gang, D. J. Tward, J. Lee, J. H. Siewerdsen, "Anatomical background and the generalized detectability index for tomosynthesis and cone-beam CT", Medical Physics, Vol. 37, Issue 5, pp.1948-1965, 2010.

    63. J. -H. Han, J. Lee, J. U. Kang, "Pixelation effect removal from fiber bundle probe based optical coherence tomography imaging", Optics Express, Vol. 18, Issue 7, pp.7427-7439, 2010.

    64. J. Lee, X. Liu, A. K. Jain, D. Y. Song, E. C. Burdette, J. L. Prince, G. Fichtinger, "Prostate brachytherapy seed reconstruction with Gaussian blurring and optimal coverage cost", IEEE Trans. Medical Imaging, Vol. 28, No. 12, pp 1955-1968, 2009.

    65. J. Lee, P. C. Doerschuk, J. E. Johnson, "Exact reduced-complexity maximum likelihood 3-D reconstruction of multiple classes of virus from unlabeled mixtures of electron microscopy images", IEEE Trans. Image Processing, Vol. 16, Issue 12, pp 2865-2878, 2007

    66. J. Chung, J. H. Lee, J. Choi, J. Lee, W. G. Kim, K. Sun, B. G. Min, "Home Care Artificial Heart Monitoring System via Internet", The International Journal of Artificial Organs, Vol. 27, No. 10, pp 898-903, 2004

    67. J. M. Ahn, J. Lee, S. W. Choi, W. E. Kim, K. S. Om, S. K. Park, W. G. Kim, J. R. Roh, B. G. Min, "Implantable Control, Telemetry, and Solar Energy System in the Moving Actuator Type Total Artificial Heart", Artificial Organs, vol.22, no.3, pp 250-259, 1998

    68. K. S. Om, J. M. Ahn, W. W. Choi, S. K. Park, S. J. Kim, Y. H. Jo, J. S. Choi, J. Lee, J. H. Choi, H. C. Kim, B. G. Min, "A Study on the Practical Estimation of Nonlinear Hemodynamic Variables for the Moving Actuator Type Total Artificial Heart", Journal of Korean Society of Medical and Biological Engineering, vol.19 no.2, pp 153-161, 1998

    Conference Proceedings and Abstracts
    1. K. Ding, C. Weiss, A. Kamireddy, K. Sheikh, A. N. Viswanathan, D. Song, R. Seethamraju, J. Lee, J. Tokuda, G. Ekchian, B. Daniel, K. Gabrielson, E. J. Schmidt, "IR-UTE MRI quantifies fibrotic radiation injury in hypoxic/normalic swine while PO2 is measured non-invasively based on implanted Oxytrack sensors," The 14th Interventional MRI Symposium, Annapolis, MD, Oct. 17-18, 2024. (accepted, abstract only)

    2. Y. Landman, G Kim, C. De Sousa, E. Schmidt, K. Sheikh, M. Roumeliotis, J. Lee, A. N. Viswanathan, "Outcomes of exclusive use of magnetic resonance image-guided brachytherapy in locally advanced cervical cancer with a focus on central control and evaluation of an auto-segmentation tool for high-risk clinical target volume," The 66th annual meeting of the American Society for Radiation Oncology (ASTRO), Washington D.C., September 29-October 2, 2024. (abstract only)

    3. K. Sheikh, B. L. Daniel, M. Roumeliotis, J. Lee, R. T. Seethamraju, T. Benkert, H. Bhat, A. N. Viswanathan, E. J. Schmidt, "MR-based fibrosis detection of radiation dose heterogeneity in gynecologic cancer patients treated with HDR brachytherapy," The 66th annual meeting of American Association of Physicists in Medicine (AAPM), Los Angeles, CA, Jul. 21-25, 2024. (abstract only)

    4. L. Mekki, W. T. Hrinivich, J. Lee, "Exploring neural network architectures for the prediction of VMAT machine parameters," The 66th annual meeting of American Association of Physicists in Medicine (AAPM), Los Angeles, CA, Jul. 21-25, 2024 (abstract only)

    5. S. Park, L. Mekki, S. Acharya, M. Ladra, J. Lee, "Age-dependent pediatric brain MR to CT image synthesis using 3D conditional GAN," The 66th annual meeting of American Association of Physicists in Medicine (AAPM), Los Angeles, CA, Jul. 21-25, 2024 (abstract only)

    6. M. Lorenzo, W. T. Hrinivich, J. Lee, T. McNutt, "Comparing advanced knowledge-based and reinforcement learning-based auto-planning approaches for VMAT for localized prostate cancer," The 66th annual meeting of American Association of Physicists in Medicine (AAPM), Los Angeles, CA, Jul. 21-25, 2024 (abstract only)

    7. M. Antaki, M. Roumeliotis, J. Lee, M. Morcos, G. Kim, E. J. Schmidt, B. van Veelen, J. Schillings, H. G. van Andel, Y. Niatsetski, A. N. Viswanathan, "Novel optimization tool for intraoperative Venezia applicator implant in gynecological cancer patients," The 66th annual meeting of American Association of Physicists in Medicine (AAPM), Los Angeles, CA, Jul. 21-25, 2024. (abstract only)

    8. G. Kim, M. Antaki, E. J. Schmidt, A. N. Viswanathan, J. Lee, "Fully automatic organ and tumor segmentation, applicator digitization, and catheter detection for MRI-guided cervical cancer brachytherapy," The 66th annual meeting of American Association of Physicists in Medicine (AAPM), Los Angeles, CA, Jul. 21-25, 2024 (abstract only)

    9. L. Mekki, S. Acharya, M. Ladra, J. Lee, "Joint MR to CT synthesis and organs-at-risk segmentation with uncertainty estimation for MR-only brain radiotherapy planning," The 66th annual meeting of American Association of Physicists in Medicine (AAPM), Los Angeles, CA, Jul. 21-25, 2024 (abstract only)

    10. R. T. Oglesby, L. Chang, E. Olatunji, J. Chotiyanonta, Y. Uchida, K. Onda, J. Lee, C. H. Pathiravasan, K. Oishi, R. Peterson, S. Acharya, "Correlation between longitudinal changes in substructure diffusion tensor imaging and neurocognitive outcomes for pediatric brain tumor patients," The 66th annual meeting of American Association of Physicists in Medicine (AAPM), Los Angeles, CA, Jul. 21-25, 2024 (abstract only)

    11. M. Antaki, M. Roumeliotis, J. Lee, M. Morcos, G. Kim, E. Schmidt, B. van Veelen, J. Schilllings, H. G. van Andel, Y. Niatsetski, A. Viswanathan, "Venezia implant re-evaluation using automated catheter selection, depth and dose optimization," 2024 World Congress of Brachytherapy, National Harbor, MD, July 10-13, 2024. (abstract only)

    12. R. T. Oglesby, L. Chang, E. Olatunji, J. Chotiyanonta, Y. Uchida, K. Onda, J. Lee, C. H. Pathiravasan, K. Oishi, R. Peterson, S. Acharya, "Correlation between longitudinal changes in substructure DTI and neurocognitive outcomes for pediatric brain tumor patients," 2024 ISMRM & ISMRT Annual Meeting & Exhibition, Singapore, May 4-9, 2024. (abstract only)

    13. P. Vagdargi, A. Uneri, S. Liu, C. K. Jones, A. Sisniega, J. Lee, P. A. Helm, W. S. Anderson, M. Luciano, G. D. Hager, J. H. Siewerdsen, "End-to-end 3D neuroendoscopic video reconstruction for robot-assisted ventriculostomy," SPIE Medical Imaging, San Diego, CA, February 18-22, 2024

    14. M. Yi, R. Duan, Z. Li, J. H. Siewerdsen, A. Uneri, J. Lee, C. K. Jones, "Joint synthesis and registration of MRI and cone-beam CT images using deep evidential uncertainty estimation of deformation fields," SPIE Medical Imaging, San Diego, CA, February 18-22, 2024

    15. B. Wan B, T. McNutt, R. Ger, H. Quon, J. Lee, "Deep learning prediction of radiation-induced xerostomia with supervised contrastive pre-training and cluster-guided loss," SPIE Medical Imaging, San Diego, CA, February 18-22, 2024

    16. S. Park, S. Acharya, M. Ladra, J. Lee J, "3D conditional GAN with transfer learning for pediatric MR to CT image synthesis combining adult and pediatric patient data," SPIE Medical Imaging, San Diego, CA, February 18-22, 2024

    17. L. Mekki, S. Acharya, M. Ladra, J. Lee J, "Joint MR to CT synthesis and segmentation for MR-only pediatric brain radiation therapy planning," SPIE Medical Imaging, San Diego, CA, February 18-22, 2024

    18. G. Kim, M. Antaki, E. J. Schmidt, M. Roumeliotis, A. N. Viswanathan, J. Lee, "Intraoperative MRI-guided cervical cancer brachytherapy with automatic tissue segmentation using dual convolutional-transformer network and real-time needle tracking," SPIE Medical Imaging, San Diego, CA, February 18-22, 2024 (Early-Career Investigator Award of the Image-Guided Procedures, Robotic Interventions, and Modeling)

    19. K. Sheikh, B. L. Daniel, J. Lee, J. Tokuda, M. Jerosch-Herold, T. Benkert, H. Bhat, R. T. Seethamraju, D. Y. Song DY, "Prostate tumor regression during radiation therapy in relation to image derived estimates of fibrosis using ultrashort echo time MRI," The 65th Annual Meeting of American Society for Radiation Oncology (ASTRO), San Diego, CA, Oct. 1-4, 2023. (abstract only)

    20. K. Sheikh, E. Schmidt, B. L. Daniel, J. Lee, J. Tokuda, M. Jerosch-Herold, T. Benkert, H. Bhat, R. T. Seethamraju, A. N. Viswanathan, "Image derived estimates of fibrosis using ultrashort echo time MRI in gynecologic cancer," The 65th Annual Meeting of American Society for Radiation Oncology (ASTRO), San Diego, CA, Oct. 1-4, 2023. (abstract only)

    21. W. T. Hrinivich, D. Y. Song, J. Lee, "Machine parameter optimization of a clinical linear accelerator using deep reinforcement learning for automatic generation of deliverable prostate VMAT plans," The 65th Annual Meeting of American Society for Radiation Oncology (ASTRO), San Diego, CA, Oct. 1-4, 2023. (abstract only)

    22. L. Su, D. A. Miles, E. Huang, R. Farjam, I. R. Marsh, Q. Li, J. A. Moore, T. R. McNutt, K. Ding, K. K. -H. Wang, A. Robinson, G. Kuri, R. Seabrease, D. P. Adam, R. Oglesby, B. Shen, B. Wu, J. Lee, X. Jia, S. Han-Oh, "Treatment planning system photon modeling and validation for matched linacs," The 65th annual meeting of American Association of Physicists in Medicine (AAPM), Jul. 23-27, 2023 (abstract only)

    23. M. Bhattacharya, H. Li, T. McNutt, J. Lee, W. T. Hrinivich, "Development of a python package for fast GPU-based proton pencil beam dose calculation," The 65th annual meeting of American Association of Physicists in Medicine (AAPM), Jul. 23-27, 2023 (abstract only)

    24. L. Mekki, S. Acharya, M. Ladra, J. Lee, "Clinical implementation of deep learning automatic segmentation pipeline for pediatric brain radiotherapy," The 65th annual meeting of American Association of Physicists in Medicine (AAPM), Jul. 23-27, 2023 (abstract only)

    25. J. Lee, T. Heffter, P. Neubauer, E. Huang, R. Pemmaraju, E. C. Burdette, D. Y. Song, "Multi-modal image guidance system for intraoperative PET-determined adaptive focal brachytherapy of prostate cancer," The 65th annual meeting of American Association of Physicists in Medicine (AAPM), Jul. 23-27, 2023 (abstract only)

    26. G. Kim, R. Bhatia, E. J. Schmidt, A. N. Viswanathan, J. Lee, "Automatic segmentation of clinical target volume on cervical cancer MR images using size-based dual convolution-transformer U-Net models," The 65th annual meeting of American Association of Physicists in Medicine (AAPM), Jul. 23-27, 2023 (abstract only)

    27. B. Wan, A. Kimura, M. Nakatsugawa, K. Schultz, S. Ross, J. Gross, C. Bettegowda, K. Redmond, J. Lee J, "Discovering robust radiomics imaging biomarkers of gene mutations of chordoma," The 65th annual meeting of American Association of Physicists in Medicine (AAPM), Jul. 23-27, 2023 (abstract only)

    28. M. Roumeliotis, M. Antaki, J. Lee, K. Sheikh, E. Schmidt, A. Viswanathan, "The impact of MRI-tracking technology on procedural time for patients undergoing perineal template-based interstitial gynecologic brachytherapy implants," American Brachytherapy Society (ABS) Annual Meeting, Vancouver, Canada, June 22-24, 2023 (abstract only)

    29. K. Sheikh, A. N. Viswanathan, D. Y. Song, J. Tokuda, J. Lee, M. Jerosch-Herold, M. K. Graham, R. Seethamraju, T. Benkert, H. Bhat, B. L. Daniels, E. J. Schmidt, "Quantification of acute and chronic fibrosis in gynecologic and prostate cancer over the course of radiotherapy," ISMRM & ISMRT Annual Meeting, Toronto, Canada, Jun. 3-8, 2023 (abstract only)

    30. R. Pemmaraju, D. Y. Song, J. Lee, "Cascaded neural network sesgmentation pipeline for automated delineation of prostate and organs at risk in male pelvic CT," SPIE Medical Imaging, San Diego, CA, February 19-23, 2023

    31. P. Vagdargi, A. Uneri, C. K. Jones, X. Zhang, P. Wu, R. Han, A. Sisniega, J. Lee, P. A. Helm, M. Luciano, W. S. Anderson, G. D. Hager, J. H. Siewerdsen, "Real-time 3D neuroendoscopic guidance using SLAM: First clinical studies," SPIE Medical Imaging, San Diego, CA, February 19-23, 2023

    32. K. Sheikh, J. Lee, M. Morcos, M. Rezaee, R. T. Seethamraju, T. Benkert, H. Bhat, H. R. Halperin, B. L. Daniel, A. Viswanathan, E. Schmidt, "Tracking evolution of acute and chronic radiation-induced fibrosis in cervical cancer using native and Late Gadolinium-Enhancement Short-Inversion-Time Ultra-Short Echo-Time (STIR-UTE)," The 64th Annual Meeting of American Society for Radiation Oncology (ASTRO), San Antonio, TX, October 23-26, 2022 (abstract only)

    33. W. Hrinivich, H. Li, J. Lee, "Automatic VMAT machine parameter optimization using deep deterministic policy gradients," The 64th Annual Meeting of American Association of Physicists in Medicine (AAPM), Washington D. C., July 10-14, 2022 (abstract only)

    34. K. Sheikh, J. Lee, R. Seethamraju, T. Benkert, H. Bhat, B. Daniel, D. Song, A. Viswanathan, E. Schmidt, "Measuring acute and chronic fibrosis over the course of radiation therapy in gynecological cancer patients using ultrashort echo time (UTE) MRI," The 64th Annual Meeting of American Association of Physicists in Medicine (AAPM), Washington D. C., July 10-14, 2022 (abstract only)

    35. H. Hooshangnejad, J. Lee, K. Ding, "XIOSIS: Novel deep learning method for image-guided spacer placement in spacer-enabled pancreatic cancer radiotherapy," The 64th Annual Meeting of American Association of Physicists in Medicine (AAPM), Washington D. C., July 10-14, 2022 (abstract only)

    36. K. Sheikh, J. Lee, M. Morcos, M. Rezaee, R. T. Seethamraju, T. Benkert, H. Bhat, H. R. Halperin, B. L. Daniel, A. N. Viswanathan, E. J. Schmidt, "Tracking evolution of acute and chronic radiation-induced fibrosis in cervical cancer using native and Late-Gadolinium-Enhancement Short-Inversion-Time Ultra-Short Echo-Time (STIR-UTE)," Joint Annual Meeting International Society for Magnetic Resonance in Medicine (ISMRM) – The European Society for Magnetic Resonance in Medicine and Biology (ESMRMB), London, England, UK, May 7-12, 2022 (abstract only)

    37. P. Duan, S. Han, L. Zuo, Y. An, Y. Liu, J. Lee, A. Carass, S. M. Resnick, J. L. Prince, "Cranial meninges reconstruction based on convolutional networks and deformable models: applications to longitudinal study of normal aging," SPIE Medical Imaging, San Diego, CA, February 20-24, 2022

    38. R. Han, C. K. Jones, P. Wu, P. Vagdargi, X. Zhang, A. Uneri, J. Lee, M. M. Luciano, W. S. Anderson, P. Helm, J. H. Siewerdsen, "Deformable registration of MRI to intraoperative cone-beam CT of the brain using a joint synthesis and registration network," SPIE Medical Imaging, San Diego, CA, February 20-24, 2022

    39. F. Zabihollahy, A. Viswanathan, E. J. Schmidt, J. Lee, "A deep learning-based clinical target volume segmentation in female pelvic MRI for radiation therapy planning," SPIE Medical Imaging, San Diego, CA, February 20-24, 2022

    40. C. Kut, T. R. McNutt, J. Lee, H. Quon, "Spatial dose sparing for organs-at-risk (OARs) to decrease severe lymphopenia risks in head and neck cancer," The 63rd Annual Meeting of American Society for Radiation Oncology (ASTRO), October 24-27. 2021 (abstract only)

    41. H. Gupta, M. P. Deek, T. R. McNutt, J. Lee, H. Quon, K. Sheikh, "Predicting progression-free survival using primary and nodal radiomic features in head and neck cancer," The 63rd Annual Meeting of American Society for Radiation Oncology (ASTRO), October 24-27. 2021 (abstract only)

    42. F. Zabihollahy, E. Schmidt, A. Viswanathan, J. Lee, "3D dense U-Net for fully automated multi-organ segmentation in female pelvic magnetic resonance imaging," The 63rd Annual Meeting of American Association of Physicists in Medicine (AAPM), July 25-29, 2021 (abstract only)

    43. W. Hrinivich, M. Deek, R. Phillips, H. Li, P. Tran, J. Lee, "Towards automatic metastasis-directed therapy planning in a three-dimensional beam model using reinforcement learning," The 63rd Annual Meeting of American Association of Physicists in Medicine (AAPM), July 25-29. 2021 (abstract only)

    44. W. T. Hrinivich, J. Lee, "Artificial intelligence-based radiotherapy planning with reinforcement learning," SPIE Medical Imaging, San Diego, CA, February 14-18, 2021

    45. M. Singh, E. Pahl, S. Wang, A. Carass, J. Lee, J. L. Prince, "Accurate estimation of total intracranial volume in MRI using a multi-tasked image-to-image translation network," SPIE Medical Imaging, San Diego, CA, February 14-18, 2021

    46. R. Han, C. K. Jones, M. D. Ketcha, P. Wu, P. Vagdargi, A. Uneri, J. Lee, M. Luciano, W. S. Anderson, J. H. Siewerdsen, "Deformable MR-CT image registration using an unsupervised end-to-end synthesis and registration network for endoscopic neurosurgery," SPIE Medical Imaging, San Diego, CA, February 14-18, 2021

    47. X. Chen, K. Sheikh, C. T. Lin, J. Lee, R. K. Hales, J. Naidoo, E. Nakajima, P. Forde, K. R. Voong, "CT radiomics and machine learning for distinguishing radiotherapy vs. immune checkpoint inhibitor-induced pneumonitis in non-small cell lung cancer patients," The 62nd Annual Meeting of American Society for Radiation Oncology (ASTRO), October 25-28, 2020

    48. P. Han, S. H. Lee, K. Noro, M. Nakatsugawa, S. Sugiyama, J. Haller, T. R. McNutt, J. Lee, K. R. Voong, R. K. Hales, "Clinical decision support system improves early identification of lung cancer patients at high risk for significant weight loss during radiotherapy," The 62nd Annual Meeting of American Society for Radiation Oncology (ASTRO), October 25-28, 2020

    49. W. T. Hrinivich, J. Lee, "Reinforcement learning for fast and intelligent radiation therapy optimization," The 2020 Joint American Association of Physicists in Medicine (AAPM) and Canadian Organization of Medical Physicists (COMP) Meeting, July 12-16, 2020 (abstract only)

    50. M. Ketcha , C. Jones, P. Wu, R. Han, A. Uneri, J. Lee, M. Luciano, W. Anderson, J. H. Siewerdsen, "Deformable MR to Cone-Beam CT Registration for High-Precision Neuro-Endoscopic Surgery," National Image-Guided Therapy Worshop, April 16-17, 2020 (abstract only)

    51. M. Morcos, J. Lee, E. Schmidt, A. N. Viswanathan, "Improving needle placement and efficiency with real-time 1.5T MR-tracking of interstitial implants," World Congress of Brachytherapy (WCB), Vienna, Austria, April 2-4, 2020 (abstract only)

    52. J. C. Reinhold, Y. He, S. Han, Y. Chen, D. Gao, J. Lee, J. L. Prince, A. Carass "Validating uncertainty in medical image translation," IEEE International Symposium on Biomedical Imaging (ISBI 2020), Iowa City, IA, April 3-7, 2020

    53. J. C. Reinhold, Y. He, A. Carass, S. Han, Y. Chen, D. Gao, J. Lee, J. L. Prince, "Finding novelty with uncertainty," SPIE Medical Imaging, Houston, TX, Feb. 15-20, 2020

    54. S. Sultana, A. Robinson, D. Y. Song, J. Lee, "CNN-based hierarchical coarse-to-fine segmentation of pelvic CT images for prostate cancer radiotherapy," SPIE Medical Imaging, Houston, TX, Feb. 15-20, 2020

    55. K. Sheikh, Z. Cheng, P. Lakshminarayanan, L. Mathews, M. Deek, T. McNutt, H. Quon H, J. Lee, "Relationship of CT radiomics and dose texture to radiation-induced swallow dysfunction in head and neck cancer," The 61st Annual Meeting of American Society for Radiation Oncology (ASTRO), Chicago, IL, Sep. 15-18, 2019 (abstract only)

    56. K. Sheikh, L. Mathews, W. Hrinivich, P. Lakshminarayanan, Z. Cheng, T. McNutt, H. Quon, J. Lee, "Predicting xerostomia using diffusion weighted imaging in head and neck cancer," The 61st Annual Meeting of American Society for Radiation Oncology (ASTRO), Chicago, IL, Sep. 15-18, 2019 (abstract only)

    57. Z. Cheng, K. Sheikh, P. Lakshminarayanan, W. Jiang, P. Han, Y. Guo, E. Cecil, L. Sloan, A. Kiess, B. Page, J. Lee, H. Quon, T. McNutt, "Voxel dose pattern for patient-reported dysphagia among head and neck cancer patients receiving definitive radiotherapy," The 61st Annual Meeting of American Society for Radiation Oncology (ASTRO), Chicago, IL, Sep. 15-18, 2019 (abstract only)

    58. S. E. Nicholas, C. R. Elledge, J. Lee, M. Morcos, E. Schmidt, H. Vadvala, A. N. Viswanathan, "Volumetric comparison by magnetic resonance imaging at diagnosis and time of brachytherapy for recurrent endometrial cancer and vaginal cancer," The 61st Annual Meeting of American Society for Radiation Oncology (ASTRO), Chicago, IL, Sep. 15-18, 2019 (abstract only)

    59. S. H. Lee, P. Han, R. Hales, K. Voong, T. McNutt, J. Lee, "Predicting acute-phase weight loss based on CT radiomics and dosiomics in lung cancer patients treated with radiotherapy," The 61st Annual Meeting of American Association of Physicists in Medicine (AAPM). San Antonio, TX, Jul. 14-18, 2019 (abstract only)

    60. S. Sultana, A. Robinson, D. Song, J. Lee, "Multimodal image fusion for prostate biopsy and focal brachytherapy with convolutional neural network autosegmentation and anatomical landmark-based registration," The 61st Annual Meeting of American Association of Physicists in Medicine (AAPM), San Antonio, TX, Jul. 14-18, 2019 (abstract only)

    61. L. Mathews, P. Lakshminarayanan, T. R. McNutt, H. Quon, J. Lee, K. Sheikh, "Normalized MR-based radiomics to predict xerostomia in head and neck cancer," The International Conference on the Use of Computers in Radiation Therapy (ICCR), Montreal, Canada, June 17-21, 2019

    62. Z. Cheng, K. Sheikh, P. Lakshminarayanan, W. Jiang, P. Han, Y. Guo, E. Cecil, L. Sloan, A. Kiess, B. Page, J. Lee, H. Quon, T. McNutt, "Voxel dose pattern for dysphagia among head and neck cancer patients receiving definitive radiotherapy," The International Conference on the Use of Computers in Radiation Therapy (ICCR), Montreal, Canada, June 17-21, 2019

    63. S. Sultana, D. Y. Song, J. Lee, "A deformable multimodal image registration using PET/CT and TRUS for intraoperative focal prostate brachytherapy," SPIE Medical Imaging, San Diego, CA, Feb. 16-21, 2019

    64. S. H. Lee, P. Han, R. K. Hales, K. R. Voong, T. R. McNutt, J. Lee, "Identifying optimal input using multilevel radiomics for predicting pulmonary function in lung cancer patients treated with radiotherapy," SPIE Medical Imaging, San Diego, CA, Feb. 16-21, 2019

    65. K. Sheikh, S. H. Lee, Z. Cheng, P. Lakshminarayanan, L. Peng, P. Han, T. R. McNutt, H. Quon, J. Lee, "Using imaging biomarkers to predict radiation induced xerostomia in head and neck cancer," SPIE Medical Imaging, San Diego, CA, Feb. 16-21, 2019

    66. W. T. Hrinivich, M. Morcos, A. Viswanathan, T. McNutt, J. Lee, "Automatic applicator digitization for MRI-based cervical cancer brachytherapy planning using two surface models," SPIE Medical Imaging, San Diego, CA, Feb. 16-21, 2019

    67. M. Stone, E. K. Tigani, A. D. Pedersen, J. Lee, J. Woo, J. L. Prince, "Tongue position during speech as a function of palatal anatomy: controls and glossectomy patients," 176th Meeting of Acoustical Society of America (ASA), Victoria, BC, Canada, Nov. 5-9, 2018 (abstract only)

    68. S. Z. Hazell, M. Zahurak, J. Lee, D. Y. Song, "Intraoperative dynamic dosimetry using registered ultrasound and fluoroscopy improves prostate brachytherapy dose coverage without increasing dose to normal tissues," The 60th Annual Meeting of the American Society for Radiation Oncology (ASTRO), San Antonio, TX, Oct. 21-24, 2018 (abstract only)

    69. L. Peng, L. Chen, P. Han, B. Baker, C. Shen, C. Gui, K. Sheikh, H. Ames, T. Kirschbaum, F. Silvestri, J. Son, A. Robinson, E. Huang, J. Grimm, K. Redmond, M. Lim, J. Lee, L. Kleinberg, "Concurrent immunotherapy usage and asymmetric growth may distinguish true progression from treatment effect in growing brain metastases after stereotactic radiosurgery," The 60th Annual Meeting of the American Society for Radiation Oncology (ASTRO), San Antonio, TX, Oct. 21-24, 2018 (abstract only)

    70. L. Peng, P. Huang, V. Parekh, K. Sheikh, B. Baker, T. Kirschbaum, F. Silvestri, J. Son, A. Robinson, H. Ames, J. Grimm, L. Chen, C. Shen, M. Soike, E. McTyre, K. Redmond, M. Lim, M. Jacobs, J. Lee, L. Kleinberg, "Application of machine learning and radiomics to distinguish true progression from treatment effect after stereotactic radiotherapy for brain metastases," The 60th Annual Meeting of the American Society for Radiation Oncology (ASTRO), San Antonio, TX, Oct. 21-24, 2018 (abstract only)

    71. K. Sheikh, S. H. Lee, Z. Cheng, L. Peng, P. Lakshminarayanan, P. Han, T. McNutt, H. Quon, J. Lee, "Role of imaging in predicting radiation induced xerostomia," The 60th Annual Meeting of the American Society for Radiation Oncology (ASTRO), San Antonio, TX, Oct. 21-24, 2018 (abstract only)

    72. A. Rao, J. Lee, W. Fu, S. Nicholas, S. Alcorn, J. Moore, M. Ladra, M. Mahadevappa, S. Bartolac, S. Terezakis, "Precision of two low-dose abdomen/pelvis CBCT protocols for alignment to bone and soft tissue in pediatric patients receiving image-guided radiation therapy," The 60th Annual Meeting of the American Society for Radiation Oncology (ASTRO), San Antonio, TX, Oct. 21-24, 2018 (abstract only)

    73. P. Han, P. Lakshminarayanan, W. Jiang, I. Shpitser, X. Hui, S. H. Lee, Z. Cheng, Y. Guo, R. Taylor, S. Siddiqui, M. Bowers, K. Sheikh, J. Lee, H. Quon, T. McNutt, "Dose-volume histogram (DVH) patterns within the salivary glands and clinical parameters predict xerostomia in head and neck cancer (HNC) patients, from injury to recovery," The 60th Annual Meeting of the American Society for Radiation Oncology (ASTRO), San Antonio, TX, Oct. 21-24, 2018 (abstract only)

    74. H. Yang, J. Sun, A. Carass, C. Zhao, J. Lee, Z. Xu, J. Prince, "Unpaired brain MR-to-CT synthesis using a structure-constrained CycleGAN," 4th Workshop on Deep Learning in Medical Image Analysis (DLMIA 2018), Lecture Notes in Computer Science (LNCS), Vol. 11045, pp. 174-182, 2018

    75. L. Peng , J. Lee, K. Sheikh, P. Huang, V. Parekh, B. Baker, T. Kirschbaum, F. Silvestri, J. Son, A. Robinson, H. Ames, J. Grimm, L. Chen, C. Shen, M. Soike, E. McTyre, K. Redmond, M. Lim, M. Jacobs, L. Kleinberg, "MRI-based radiomics distinguishes treatment effect from true progression after stereotactic radiosurgery for brain metastases," The 60th Annual Meeting of the American Association of Physicists in Medicine (AAPM), Nashville, TN, Jul. 29-Aug. 2, 2018 (abstract only)

    76. P. Lakshminarayanan, W. Jiang, S. Robertson, Z. Cheng, P. Han, M. Bowers, J. Moore, J. Lee, H. Quon, R. Taylor, T. McNutt, "Radio-morphology: parametric shape-based features for outcome prediction in radiotherapy," The 60th Annual Meeting of the American Association of Physicists in Medicine (AAPM), Nashville, TN, Jul. 29-Aug. 2, 2018 (abstract only)

    77. K. Sheikh, L. Peng, S. H. Lee, P. Han, Z. Cheng, P. Lakshminarayanan, T. McNutt, H. Quon, J. Lee, "CT/MRI-based radiomics analysis to predict radiation induced xerostomia in head and neck cancer radiotherapy," The 60th Annual Meeting of the American Association of Physicists in Medicine (AAPM), Nashville, TN, Jul. 29-Aug. 2, 2018 (abstract only)

    78. W. T. Hrinivich, M. Morcos, J. Lee, A. Viswanathan, T. McNutt, "Automatic tandem and ring digitization for MRI-guided cervical cancer brachytherapy," The 60th Annual Meeting of the American Association of Physicists in Medicine (AAPM), Nashville, TN, Jul. 29-Aug. 2, 2018 (abstract only)

    79. W. T. Hrinivich, S. Park, D. Song, J. Lee, "Deformable registration to align prostate brachytherapy seeds identified using x-ray projections to MRI for accurate post-implant dosimetry," The 60th Annual Meeting of the American Association of Physicists in Medicine (AAPM), Nashville, TN, Jul. 29-Aug. 2, 2018 (abstract only)

    80. P. Han, P. Lakshminarayanan, W. Jiang, I. Shpitser, X. Hui, S. H. Lee, Z. Cheng, Y. Guo, R. Taylor, S. Siddiqui, M. Bowers, K. Sheikh, J. Lee, H. Quon, T. McNutt, "Head and neck salivary gland spatial dose-volume histogram (DVH) patterns predict radiation-induced xerostomia, from injury to recovery," The 60th Annual Meeting of the American Association of Physicists in Medicine (AAPM), Nashville, TN, Jul. 29-Aug. 2, 2018 (abstract only)

    81. S. Sultana, D. Song, J. Lee, "PET/CT-ultrasound registration for PET-determined prostate brachytherapy," The 60th Annual Meeting of the American Association of Physicists in Medicine (AAPM), Nashville, TN, Jul. 29-Aug. 2, 2018 (abstract only)

    82. S. H. Lee, P. Han, R. Hales, K. Voong, J. Wong, T. McNutt, J. Lee, "Multilevel radiomics analysis for prediction of baseline pulmonary function in lung cancer patients treated with IMRT," The 60th Annual Meeting of the American Association of Physicists in Medicine (AAPM), Nashville, TN, Jul. 29-Aug. 2, 2018 (abstract only)

    83. S. Nicholas, J. Lee, M. Morcos, E. Schmidt, A. Viswanathan, "Volumetric comparison by magnetic resonance imaging at diagnosis and time of brachytherapy for recurrent endometrial cancer and vaginal cancer," American Brachytherapy Society (ABS) Annual Meeting, San Francisco, CA, June. 7-9, 2018 (abstract only)

    84. J. Lee, D. Y. Song, "CT-ultrasound deformable registration for PET-determined prostate brachytherapy," Proceedings of SPIE, Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling, Vol. 10576, pp.10576Z-1-7, 2018. Cum Laude Poster Presentation Award in Image-Guided Procedures, Robotic Interventions, and Modeling Conference

    85. L. Peng, B. Baker, L. Chen, C. Shen, C. Gui, K. Sheikh, A. Robinson, E. Huang, J. Lee, J. Grimm, K. Redmond, M. Lim, L. Kleinberg, "Clinical correlates of true progression versus treatment effect in brain metastases resected for progression after stereotactic radiosurgery," American College of Radiation Oncology Annual Meeting, Fort Lauderdale, FL, Feb. 1-3, 2018 (abstract only)

    86. R. Yan, S. Ashrafinia, S. Park, J. Lee, L. C. Chu, C. T. Lin, A. Hussien, J. Steingrimsson, P. Huang, "The use of low-dose CT intra- and extra-nodular image texture features to improve small lung nodule diagnosis in lung cancer screening," 2017 IEEE Nuclear Science Symposium and Medical Imaging Conference, Atlanta, GA, Oct. 21-28, 2017

    87. P. Huang, S. Park, R. Yan, J. Lee, L. C. Chu, C. T. Lin, A. Hussien, R. Hales, J. Steingrimsson, D. S. Ettinger, M. Brock, E. K. Fishman, E. Gabrielson, S. Lam, "Lung Cancer Early Diagnosis through Image Texture Analysis and Machine Learning," 2nd SIIM Conference on Machine Intelligence in Medical Imaging, Baltimore, MD, Sep. 26-27, 2017 (abstract only)

    88. C. Zhao, A. Carass, J. Lee, Y. He, J. L. Prince, "Whole brain segmentation and labeling from CT using synthetic MR images," 8th International Workshop on Machine Learning in Medical Imaging (MLMI), A MICCAI 2017 Workshop, Quebec City, Quebec, Canada, Sep. 10, 2017

    89. C. Zhao, A. Carass, J. Lee, A. Jog, J. L. Prince, "A supervoxel based random forest synthesis framework for bidirectional MR/CT synthesis," Simulation and Synthesis in Medical Imaging (SASHIMI), A MICCAI 2017 Workshop, Quebec City, Quebec, Canada, Sep. 10, 2017

    90. M. Ostyn, D. Lee, E. Fields, S. Kim, H. Yoon, J. Lee, T. Kim, "A Novel Assisted Breath Hold System for Involuntary Breath Hold in Radiotherapy," The 59th Annual Meeting of The American Association of Physicists in Medicine (AAPM), Denver, CO, July 30-August 3, 2017 (abstract only)

    91. S. Park, R. Farah, S. M. Shea, E. Tryggestad, R. Hales, J. Lee, "Evaluation of tumor motion management with dynamic MRI in lung cancer patients," The 59th Annual Meeting of The American Association of Physicists in Medicine (AAPM), Denver, CO, July 30-August 3, 2017 (abstract only)

    92. J. Lee, A. Carass, A. Jog, C. Zhao, J. L. Prince, "Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning," Proceedings of SPIE Medical Imaging, Vol. 10133, p. 101331I, 2017

    93. S. Park, R. Farah, S. M. Shea, E. Tryggestad, R. Hales, J. Lee, "Evaluation of lung tumor motion management in radiation therapy with dynamic MRI," Proceedings of SPIE Medical Imaging, Vol. 10135, p. 101351R, 2017

    94. H. Zhang, G. J. Gang, J. Lee. J. Wong, J. W. Stayman, "Integration of prior CT into CBCT reconstruction for improved image quality via reconstruction of difference: first patient studies," Proceedings of SPIE Medical Imaging, Vol. 10132, p. 1013211, 2017

    95. M Nakatsugawa, Z. Cheng, K. Goatman, J. Lee, A. Robinson, A. Kiess, X. Hui, S. Robertson, M. Bowers, A. Choflet, K. Utsunomiya, S. Sugiyama, J. Wong, T. McNutt, H. Quon, "Radiomic analysis of salivary glands for the prediction of weight loss in irradiated head and neck cancer patients," The 102nd Scientific Assembly and Annual Meeting of Radiological Society of North America (RSNA), Chicago, IL, November 27-December 2, 2016 (abstract only)

    96. H. Quon, S. Park, W. Plishker, J. W. Wong, T. R. McNutt, R. Shekhar, J. Lee, "Preliminary clinical evidence of parotid sub-volume dependency and the risk of radiation-induced xerostomia in head and neck cancer (HNC) patients," The 58th Annual Meeting of American Society for Radiation Oncology (ASTRO), Boston, MA, September 25-28, 2016 (abstract only)

    97. O. Y. Mian, C. Gergis, Adam Ferro, Y. Le, S. Robertson, R. Hobbs, J. L. Prince, Todd McNutt, T. L. DeWeese, J. Lee, D. Y. Song, "A prospective study of 80 patients evaluating registered ultrasound and fluoroscopy (RUF) For intraoperative dose calculation: improved accuracy compared to conventional ultrasound-based intraoperative dosimetry," The 58th Annual Meeting of American Society for Radiation Oncology (ASTRO), Boston, MA, September 25-28, 2016 (abstract only)

    98. M Nakatsugawa, Z. Cheng, K. Goatman, J. Lee, A. Robinson, A. Choflet, K. Sakaue, S. Sugiyama, A. Kiess, J. Wong, T. McNutt, H. Quon, "Radiomic analysis of salivary glands and its role for predicting xerostomia in irradiated head and neck cancer patients ," The 58th Annual Meeting of American Society for Radiation Oncology (ASTRO), Boston, MA, September 25-28, 2016 (abstract only)

    99. X. Hui, H. Quon, S. Robertson, Z. Cheng, J. Moore, M. Bowers, B. Page, A. Kiess, S. Park, J. Lee, T. McNutt, "An Oncospace risk prediction model for head and neck radiation toxicities: Novel insights to reduce the risk of head and neck radiation-induced xerostomia," The 58th Annual Meeting of American Society for Radiation Oncology (ASTRO), Boston, MA, September 25-28, 2016 (abstract only)

    100. R. Farah, S. Park, S. M. Shea, E. Tryggestad, J. Wong, R. Hales, J. Lee, "Evaluation of lung tumor motion management strategy with dynamic MRI," The 58th Annual Meeting of The American Association of Physicists in Medicine (AAPM), Washington D.C., July 31-August 4, 2016 (abstract only)

    101. S. Park, H. Quon, T. McNutt, W. Plishker, R. Shekhar, J. Lee, "Predicting radiation-induced xerostomia by dosimetrically accounting for daily setup uncertainty during head and neck IMRT," The 58th Annual Meeting of The American Association of Physicists in Medicine (AAPM), Washington D.C., July 31-August 4, 2016 (abstract only)

    102. S. Park, Y. Le, D. Y. Song, J. Lee, "Post-implant dosimetry in prostate brachytherapy by X-ray and MRI fusion," The 58th Annual Meeting of The American Association of Physicists in Medicine (AAPM), Washington D.C., July 31-August 4, 2016 (abstract only)

    103. D. Song, Y. Le, H. J. Bae, R. Hobbs, S. K. Ng, J. Lee, "Dynamic intraoperative dosimetry using registered fluoroscopy and ultrasound: initial results of a phase II trial," World Congress of Brachytherapy, San Francisco, CA, June 27-29, 2016 (abstract only)

    104. M. Stone, J. Woo, J. Lee, T. Poole, A. Seagraves, M. Chung, E. Kim, E. Murano, J. L. Prince, S. Blemker, "Muscular structure of the human tongue from magnetic resonance image volumes," Acoustical Society of America Spring 2016 Meeting, Salt Lake City, Utah, May 23-27, 2016 (abstract only)

    105. E. Dehghan, Y. Le, J. Lee, D. Y. Song, G. Fichtinger, J. L. Prince, "CT and MRI fusion for postimplant prostate brachytherapy evaluation," International Symposium on Biomedical Imaging: From Nano to Macro, Prague, Czech Republic, April 13-16, 2016

    106. S. Park, A. Robinson, H. Quon, A. P. Kiess, C. Shen, J. Wong, W. Plishker, R. Shekhar, J. Lee, "Accurate tracking of tumor volume change during radiotherapy by CT-CBCT registration with intensity correction," SPIE Medical Imaging, San Diego, CA, February 27-March 3, 2016

    107. S. Park, D. Y. Song, J. Lee, "Deformable registration of X-ray to MRI for post-implant dosimetry in prostate brachytherapy," SPIE Medical Imaging, San Diego, CA, February 27-March 3, 2016

    108. Y. Zhang, L. Su, J. Lee, T. Hooker, S. K. Ng, I. Iordachita, J. Wong, J. M. Herman, H. T. Sen, P. Kazanzides, M. A. L. Bell, K. Ding, "Planning feasibility study of ultrasound-guided stereotactic radiation therapy (SBRT) on cyberknife for pancreatic cancer," The 57th Annual Meeting of American Society for Radiation Oncology (ASTRO), San Antonio, TX, Oct. 18-21, 2015 (abstract only)

    109. L. Su, Y. Zhang, J. Lee, S. K. Ng, I. Iordachita, J. Jackson, J. Wong, J. Herman, H. T. Sen, P. Kazanzides, M. A. L. Bell, K. Ding, "Stereotactic body radiation therapy planning for pancreas cancer under real-time ultrasound monitoring," The 57th Annual Meeting of American Society for Radiation Oncology (ASTRO), San Antonio, TX, Oct. 18-21, 2015 (abstract only)

    110. J. Woo, F. Xing, J. Lee, M Stone, J. Prince, "Statistical modeling of tongue motion during speech," The 3rd International Workshop on Biomechanical and Parametric Modeling of Human Anatomy (PMHA), Montreal, Quebec, Canada, August 29-30, 2015 (abstract only)

    111. M. Stone, J. Woo, J. Lee, T. Poole, A. Schaeffer, M. Chung, E. Kim, E. Murano, S. Blemker, J. Prince, "Muscle anatomy and variability in healthy human tongues," The 3rd International Workshop on Biomechanical and Parametric Modeling of Human Anatomy (PMHA), Montreal, Quebec, Canada, August 29-30, 2015 (abstract only)

    112. R. Farah, S. Shea, E. Tryggestad, R. T. Forbang, J. Wong, R. Hales, J. Lee, "4D-MRI reconstruction using group-wise registration," The 57th Annual Meeting of The American Association of Physicists in Medicine (AAPM), Anaheim, CA, July 12-16, 2015.(abstract only)

    113. S. Park, W. Plishker, A. Robinson, G. Zaki, R. Shekhar, T. McNutt, H. Quon, J. Wong, J. Lee, "GPU-based software platform for efficient image-guided adaptive radiation therapy," The 57th Annual Meeting of The American Association of Physicists in Medicine (AAPM), Anaheim, CA, July 12-16, 2015.(abstract only)

    114. S. Park, A. Robinson, W. Plishker, R. Shekhar, A. P. Kiess, H. Quon, J. Wong, J. Lee, "Predicting volume change of the tumor and critical structures throughout radiation therapy by CT-CBCT registration with local intensity correction," The 57th Annual Meeting of The American Association of Physicists in Medicine (AAPM), Anaheim, CA, July 12-16, 2015.(abstract only)

    115. L. Di Maso, R. T. Forbang, Y. Zhang, J. Herman, J. Lee, " Dosimetric consequences of uncorrected rotational setup errors during stereotactic body radiation therapy (SBRT) treatment of pancreatic cancers," The 57th Annual Meeting of The American Association of Physicists in Medicine (AAPM), Anaheim, CA, July 12-16, 2015 (abstract only)

    116. J. Woo, F. Xing, J. Lee, M. Stone, J. L. Prince, "Construction of an unbiased spatio-temporal atlas of the tongue during speech," Information Processing in Medical Imaging (IPMI), Isle of Skye, Scotland, Jun. 28-Jul. 3, 2015.

    117. S. Park, W. Plishker, A. Robinson, G. Zaki, R. Shekhar, T. McNutt, H. Quon, J. Wong, J. Lee, "A hardware-accelerated software platform for adaptive radiation therapy,"  World Congress on Medical Physics & Biomedical Engineering, IFMBE Proceedings, Vol. 51, pp. 509-512, Toronto, Canada, Jun. 7-12, 2015.

    118. S. Park, W. Plishker, R. Shekhar, H. Quon, J. Wong, J. Lee, "Deformable registration of CT and cone-beam CT by local CBCT intensity correction," Proceedings of SPIE, Vol. 9413, p. 941333, 2015.

    119. L. DiMaso, J. Herman, J. Lee, R. T. Forbang, "Dosimetric consequences of uncorrected rotational setup errors during stereotactic body radiation therapy: case study - pancreatic cancers," Mid-Atlantic Chapter - The American Association of Physicists in Medicine (MAC-AAPM) 2014 Annual Meeting, Georgetown University, Washington D.C., Oct. 10-11, 2014. (abstract only)

    120. J. Woo, F. Xing, J. Lee, M. Stone, J. L. Prince, "Determining functional units of tongue motion via graph-regularized sparse non-negative matrix factorization," The 17th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Boston, MA, Sep. 14-18, 2014.

    121. W. Plishker, G. Zaki, J. Lee, J. W. Wong, T. McNutt, R. Shekhar, "Retrospective assessment of image mask box sizing for automatic patient positioning," The 56th ASTRO annual meeting, International Journal of Radiation Oncology, Biology, Physics, Volume 90, Issue 1, Supplement, pp. S830-S831, San Francisco, September 14-17, 2014. (abstract only)

    122. N. Kuo, E. Dehghan, Y. Le, A. Deguet, E. C. Burdette, G. Fichtinger, J. L. Prince, D. Y. Song, J. Lee, "Ultrasound and fluoroscopy based intraoperative image-guidance system for dynamic dosimetry in prostate brachytherapy," The 56th Annual Meeting of The American Association of Physicists in Medicine (AAPM), Austin, TX, Jul. 20-24, 2014. (abstract only)

    123. O. Y. Mian, Y. Le, A. Robinson, J. Lee, D. Y. Song, "A prospective study of registered ultrasound and fluoroscopy (RUF) for intraoperative dose calculation: improved accuracy compared to current ultrasound-based intraoperative dosimetry," 2014 American Brachytherapy Society (ABS) Annual Meeting, Apr. 3-5, San Diego, CA, 2014. (abstract only)

    124. Y. Le, A. Robinson, J. Lee, D. Y. Song, "Evaluation of prostate volume and shape change after permanent prostate brachytherapy using a novel deformable registration method," 2014 American Brachytherapy Society (ABS) Annual Meeting, Apr. 3-5, San Diego, CA, 2014. (abstract only)

    125. S. Roy, A. Carass, A. Jog, J. L. Prince, J. Lee, "MR to CT registration of brains using image synthesis," Proc. of SPIE Medical Imaging, Vol. 9034, pp. 903419, 2014.

    126. F. Xing, J. Woo, E. Murano, J. Lee, M. Stone, J. Prince, "3D tongue motion from tagged and cine MR images," The 16th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Lecture Notes in Computer Science, Volume 8151, pp 41-48, Nagoya, Japan, Sep. 22-26, 2013.

    127. D. Song, Y. Le, J. Lee, N. Kuo, A. Robinson, A. Deguet, E. C. Burdette, G. Fichtinger, J. L. Prince, "Dynamic dosimetry using ultrasound-fluoroscopy registration identifies cold spots intraoperatively during LDR prostate brachytherapy," American Society for Radiation Oncology (ASTRO) 55th Annual Meeting, Atlanta, GA, September 22-25, 2013. (abstract only)

    128. J. Lee, R. Jacques, W. Li, W. Plishker, J. Moore, R. Shekhar, T. McNutt, J. Wong, "Fast computation of actual dose delivered to the patient for IMRT treatment quality assessment and adaptive radiotherapy," The 55th Annual Meeting of The American Association of Physicists in Medicine (AAPM), Indianapolis, IN, August 4-8, 2013. (abstract only)

    129. Y. Le, J. Lee, A. Robinson, D. Y. Song, "Deformable registration of post-implant MRI to intra-operative ultrasound images for permanent prostate brachytherapy treatment assessment," The 55th Annual Meeting of The American Association of Physicists in Medicine (AAPM), Indianapolis, IN, August 4-8, 2013. (abstract only)

    130. E. Z. Murano, F. Xing, J. Woo, J. Lee, J. Zhuo, R. Gullapalli, R. A. Ord, M. Stone, J. L. Prince, "Primary compensatory speech strategy in post-glossectomy patients - A 4D MRI study," Proceedings of the 10th International Conference on Advances in Quantitative Laryngology, Voice and Speech Research, Cincinnati, OH, June 3-4, 2013.

    131. J. Woo, J. Lee, J. Bogovic, E. Z. Murano, F. Xing, M. Stone, J. L. Prince, "Multi-subject atlas building from structural tongue MR images," The 21st International Congress on Acoustics, The 165th Meeting of the Acoustical Society of America, The 52nd Meeting of the Canadian Acoustical Association, Montreal, Canada, June 2-7, 2013.

    132. Y. Le, Q. He, J. Lee, A. Robinson, D. Song, "Critical organs sparing for preserving erectile function by non-template based permanent prostate brachytherapy," American Brachytherapy Society (ABS) Annual Meeting, New Orleans, LA, April. 18-20, 2013. (abstract only)

    133. Y. Le, A. Robinson, J. Lee, D. Song, "A novel method to register post-implant MRI to pre-plan Ultrasound images to evaluate needle passage through neurovascular bundles during permanent prostate implant," American Brachytherapy Society (ABS) Annual Meeting, April. 18-20, New Orleans, LA, 2013. (abstract only)

    134. J. Lee, J. Woo, F. Xing, E. Z. Murano, M. Stone, J. L. Prince, "Semi-automatic segmentation of the tongue for 3D motion analysis with dynamic MRI," IEEE International Symposium on Biomedical Imaging: From Nano to Macro, San Francisco, CA, April 7-11, 2013.

    135. F. Xing, E. Z. Murano, J. Lee, J. Woo, M. Stone, J. L. Prince, "MRI analysis of 3D normal and post-glossectomy tongue motion in speech," IEEE International Symposium on Biomedical Imaging: From Nano to Macro, San Francisco, CA, April 7-11, 2013.

    136. W. Li, W. Plishker, J. Lee, R. Shekhar, "Subminute nonrigid multimodality image registration for image-guided radiation therapy," The 6th Image Guided Therapy Workshop (National Center for Image Guided Therapy), Arlington, VA, March 21-23, 2013. (abstract only)

    137. N. Kuo, E. Dehghan, A. Deguet, D. Y. Song, J. L. Prince, J. Lee, "A dynamic dosimetry system for prostate brachytherapy," SPIE Medical Imaging, Lake Buena Vista, FL, Feb. 9-14, 2013

    138. E. Murano, F. Xing, P Evitts, J. Woo, J. Lee, J. Zhuo, R. Gullapalli, M. Stone, R. Ord, J. Prince, "Tongue muscle adaptation measured with 4D dynamic MRI - glossectomy with flap vs. no-flap," Joint Meeting of the American Academy of Maxillofacial Prosthetics (AAMP) and International Society for Maxillofacial Rehabilitation (ISMR), Baltimore, MD, Oct. 27-30, 2012.

    139. F. Xing, J. Lee, E. Murano, M. Stone, J. L. Prince, "Estimating 3D tongue motion with MR images," IEEE Asilomar Conference on Signals, Systems, and Computers, Monterey, CA, Nov. 4-7, 2012.

    140. Y. Le, Q. He, J. Lee, D. Y. Song, "Development of non-template based permanent prostate brachytherapy treatment planning system for penile bulb avoidance," The 54th American Brachytherapy Society Annual Meeting (ASTRO), Boston, MA, Oct. 28-31, 2012.

    141. Y. Le, Q. He, J. Lee, D. Y. Song, "Evaluation of prostate volume and shape change after permanent prostate brachytherapy using implanted seed displacement analysis," The 54th Annual Meeting of American Association of Physicists in Medicine (AAPM), Charlotte, NC, Jul. 29 - Aug. 2, 2012.

    142. J. Lee, J. W. Stayman, Y. Otake, S. Schafer, W. Zbijewski, A. J. Khanna, J. L. Prince, J. H. Siewerdsen, "Incorporation of prior knowledge for region of change imaging from sparse scan data in image-guided surgery", SPIE Medical Imaging, San Diego, CA, Feb. 4-9, 2012.

    143. E. Dehghan, J. Lee, P. Fallavollita, N. Kuo, A. Deguet, E. C. Burdette, D. Y. Song, J. L. Prince, G. Fichtinger, "Point-to-volume registration of prostate implants to ultrasound", The 14th International Conference on Medical Image Computing and Computer Assisted intervention (MICCAI), Toronto, Canada, Sep. 18-22, 2011.

    144. J. W. Stayman, W. Zbijewski, Y. Otake, S. Schafer, J. Lee, J. L. Prince, J. H. Siewerdsen, "Using prior images with registration in penalized likelihood estimation for CT with sparse data", The 53th Annual Meeting of American Association of physicists in Medicine (AAPM), Vancouver, Canada, Jul. 31 - Aug. 4, 2011.

    145. J. W. Stayman, W. Zbijewski, Y. Otake, S. Schafer, J. Lee, J. L. Prince, J. H. Siewerdsen, "Penalized-likelihood reconstruction for sparse data acquisitions with unregistered prior images and compressed sensing penalties", proc. of SPIE Medical Imaging, Vol. 7961, 79611L, Lake Buena Vista, FL, Feb. 12-17, 2011.

    146. E. Dehghan, J. Lee, M. Moradi, X. Wen, G. Fichtinger, S. E. Salcudean, "Prostate brachytherapy seed reconstruction using C-arm rotation measurement and motion compensation", The 13th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Part I, LNCS, Vol. 6361, pp. 283-290, Beijing, China, Sep. 20-24, 2010. Young Scientist Award.

    147. J. Lee, Y. Zheng, Z. Yin, P. C. Doerschuk, J. E. Johnson, "Classification of cryo electron microscopy images, noisy tomographic images recorded with unknown projection directions, by simultaneously estimating reconstructions and application to an assembly mutant of Cowpea Chlorotic Mottle Virus and portals of the bacteriophage P22", Proceedings of SPIE, Optics & Photonics, Image Reconstruction from Incomplete Data VI, Vol. 7800, pp.78000R1-10, San Diego, CA, Aug. 1-5, 2010.

    148. G. J. Gang, J. Lee, J. W. Stayman, D. Tward, W. Zbijewski, J. L. Prince, J. H. Siewerdsen, "Task-based analysis of detectability in tomosynthesis and cone-beam CT: validation of Fourier metrics in comparison to real observers", The 52nd Annual Meeting of American Association of Physicists in Medicine, Philadelphia, PA, July 18-22, 2010.

    149. N. Kuo, J. Lee, C. Tempany, M. Stuber, J. L. Prince, "Seed localization in MRI-guided prostate brachytherapy using inversion-recovery with on-resonant water suppression (IRON)", Proceedings of The 19th Annual Meeting of International Society for Magnetic Resonance in Medicine (ISMRM), Vol. 18, p. 2937, 2010.

    150. J. Lee, D. Y. Song, E. C. Burdette, G. Fichtinger, J. L. Prince, "Optimal reconstruction method for intraoperative seed localization using fluoroscopy in prostate brachytherapy", American Brachytherapy Society Annual Meeting, Atlanta, Georgia, April 29-May 01, 2010.

    151. N. Kuo, J. Lee, C. Tempany, M. Stuber, J. L. Prince, "MRI-based prostate brachytherapy seed localization", The 7th IEEE International Symposium on Biomedical Imaging, 2010.

    152. M. S. Ayad, J. Lee, A. Deguet, E. C. Burdette, J. L. Prince, "C-arm pose estimation using a set of coplanar ellipses in correspondence", Proceedings of The 7th IEEE International Symposium on Biomedical Imaging, pp.1401-1404, 2010.

    153. N. Kuo, J. Lee, A. Deguet, D. Y. Song, E. C. Burdette, J. L. Prince, "Automatic Segmentation of Seeds and Fluoroscope Tracking (FTRAC) Fiducial in Prostate Brachytherapy X-ray Images", Proceedings of SPIE Medical Imaging, Vol.7625, pp.76252T-1-9, San Diego, California, USA, Feb. 2010.

    154. G. J. Gang, J. Lee, J. W. Stayman, D. Tward, W. Zbijewski, J. L. Prince, J. H. Siewerdsen, "The generalized NEQ and detectability index for tomosynthesis and cone-beam CT: from cascaded systems analysis to human observers", SPIE Medical Imaging, San Diego, California, USA, Feb. 2010.

    155. J. Lee, C. Labat, A. K. Jain, D. Y. Song, E. C. Burdette, G. Fichtinger, J. L. Prince, "Optimal Matching for Prostate Brachytherapy Seed Localization with Dimension Reduction", The 12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Part I, LNCS 5761, pp. 59-66, London, UK, Sep. 2009. Conference Travel Award.

    156. J. Lee, C. Labat, A. K. Jain, G. Fichtinger, J. L. Prince, "Reduced-dimensionality matching for 3-D reconstruction of prostate brachytherapy implants from incomplete data", Proc. the 6th IEEE International Symposium on Biomedical Imaging, pp. 1047-1050, Boston, Massachusetts, USA, Jun. 28 - Jul. 1, 2009.

    157. O. Sadowsky, J. Lee, E. G. Sutter, S. J. Wall, J. L. Prince, R. H. Taylor, "Enhancement of mobile C-arm cone-beam reconstruction using prior anatomical models", Proc. SPIE Medical Imaging, Vol.7258, 72585B, Lake Buena Vista, Florida, USA, Feb. 7-12, 2009.

    158. M. S. Ayad, J. Lee, J. L. Prince, G. Fichtinger, "Prostate brachytherapy seed localization using a mobile C-arm without tracking", Proc. SPIE Medical Imaging, Vol.7261, 72611K, Lake Buena Vista, Florida, USA, Feb. 7-12, 2009. Best Student Paper Award, Student Travel Award.

    159. J. Lee, X. Liu, J. L. Prince, G. Fichtinger, "Prostate brachytherapy seed localization with Gaussian blurring and camera self-calibration", The 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) 2008, Part II, LNCS 5242, pp. 636-643, 2008.

    160. J. Lee, X. Liu, A. K. Jain, J. L. Prince, G. Fichtinger, "Tomosynthesis-based radioactive seed localization in prostate brachytherapy using modified distance map images", Proc. the 5th IEEE International Symposium on Biomedical Imaging (ISBI), pp.680-683, Paris, France, May 14-17, 2008. Conference Travel Award.

    161. J. Lee, P. C. Doerschuk, J. E. Johnson, "Simultaneous 3-D image reconstruction and classification with applications to structural virology", Optical Society of America, Signal Recovery and Synthesis, Vancouver, BC, Canada, June 18-20, 2007.

    162. J. Lee, Y. Zheng, P. C. Doerschuk, "Computing the 3-D structure of viruses from unoriented cryo electron microscope images: a fast algorithm for a statistical approach", IEEE 2006 International Conference of the Engineering in Medicine and Biology Society, New York City, New York, USA, Aug. 30-Sep. 3, 2006

    163. J. Lee, Y. Zheng, P. C. Doerschuk, "A fast algorithm for 3D reconstruction from unoriented projections and cryo-electron microscopy of viruses", IS&T/SPIE 18th Annual Symposium, Electronic Imaging, San Jose, California, U.S.A., Jan. 15-19, 2006.

    164. J. Lee, P. C. Doerschuk, J. Tang, J. E. Johnson, "Computing the 3-D structure of viruses from electron microscope images", Optical Society of America, Signal Recovery and Synthesis, Charlotte, NC, U.S.A., June 6-9, 2005 (abstract only).

    165. J. Lee, P. C. Doerschuk, J. Tang, J. E. Johnson, "Computing the 3-D structure of viruses from electron microscope images", IEEE International Conference on Acoustics, Speech and Signal Processing(ICASSP), May 2005.

    166. J. Lee, Y. Zheng, P. C. Doerschuk, J. Tang, J. E. Johnson, "Maximum likelihood 3-D reconstruction of multiple viruses from mixtures of cryo electron microscope images", IS&T/SPIE 17th Annual Symposium, Electronic Imaging, San Jose, California, U.S.A., Jan. 16-20, 2005.

    167. J. Lee, Z. Yin, P. C. Doerschuk, J. E. Johnson, "Processing electron micrographs of spherical viruses: Joint ab initio 3-D reconstructions and classification", 1st Annual Viruses & Protein Cages as Materials 2004, Center for Bio-Inspired Nanomaterials, Montana State University, Bozeman, Montana, Aug. 1 - Aug. 3, 2004.

    168. S.W.Yi, J.H.Choi, J. Lee, J.J.Lee, K.S.Om, J.M.Ahn, B.G.Min, "Development of the second telemetry and the external management system for Total Artificial Heart", Proc. of KOSOMBE Fall Conference, vol.20, No.2, pp.243-244, 1998.

    169. J.J.Lee, J.H.Choi, J.H.Lee, S.W.Lee, K.S.Om, J.M.Ahn, B.G.Min, "A study on the performance of the polymer valve in total artificial heart", Proc. of KOSOMBE Fall conference, vol.20, No.2, pp.241-242, 1998.

    170. J. Lee, W.E.Kim, J.H.Choi, J.J.Lee, J.S.Choi, B.G.Min, "In-vitro and In-vivo Evaluation of the Transcutaneous Optical Information Transmission System for Total Artificial Heart", Proc. of KOSOMBE Spring Conference, vol.20, No.1, pp.000-000, 1998.

    171. J.H.Choi, J.S.Choi, Y.H.Cho, W.E.Kim, J. Lee, J.M.Ahn, B.G.Min, "An automatic control algorithm based on the variation of the heart rate for the implantable ventricular assist device", Proc. of KOSOMBE Spring conference, vol.20, No.1, pp.267-268, 1998.

    172. D. H. Lee, J. Lee, S. J. Kim, J. H. Kim, N. K. Kim, B. G. Min, "Artificial heart virtual surgery using rapid prototyping", Proc. of KOSOMBE Spring Conference, Vol. 20, No. 1, 1998.

    173. B. S. Shin, D. H. Lee, J. J. Choi, J. Lee, Y. K. Shin, J. H. Kim, C. H. Oh, D. K. Kim, "Development of an image-guided surgical planning system for brain surgery using 3-D imaging technique", Proc. of KOSOMBE Spring Conference, Vol. 20, No. 1, 1998.

    174. J.S.Choi, W.W.Choi, J.M.Ahn, J. Lee, B.G.Min, "An Automatic Controller for Load-Sensitive Control of Assist Flow in Electro-Hydraulic Type Ventricular Assist Device", World congress on medical physics and biomedical engineering, Nice, vol.35, supplement part 1, p587, September, 1997.(abstract only).

    175. J. Lee, J.M.Ahn, W.E.Kim, B.G.Min, "A Transcutaneous Information Transmission System using Near Infrared Light for the Moving Actuator Type Total Artificial Heart", World congress on medical physics and biomedical engineering, Nice, vol.35, supplement part 2, p1195, September, 1997. (abstract only).

    176. S.W.Yi, J.M.Ahn, K.S.Om, J.S.Choi, J. Lee, W.E.Kim, B.G.Min, "New Challenge of the CPU for a Moving-Actuator Type Total Artificial Heart", Proc. of KOSOMBE conference, vol.19, no.2, pp118-121, 1997.

    177. J.H.Choi, W.W.Choi, K.S.Om, J. Lee, B.G.Min, "Fuzzy Gain of PI Speed Controller Depending on Afterloads in Total Artificial Heart", Proc. of KOSOMBE conference, vol.19, no.1, pp156-160, 1997.

    178. J. Lee, W.E.Kim, J.H.Choi, J.M.Ahn, B.G.Min, "Development of a Transcutaneous Optical Information Transmission System for Total Artificial Heart using Near Infrared Laser", Proc. of KOSOMBE conference, vol.19, no.1, pp64-67, 1997.

    179. K.S.Om, J.M.Ahn, J. Lee, J.H.Choi, W.E.Kim, B.G.Min, "The Supervisory Control System in a Moving-actuator Type Total Artificial Heart: thought and progress", Proc. of KOSOMBE conference, vol.19, no.1, pp55-58, 1997.

    180. J.J.Lee, W.W.Kim, J. Lee, J.H.Choi, B.G.Min, "Simulation of Photon Propagation for Transcutaneous Optical Communication", Proc. of KOSOMBE conference, vol.18, no.2, pp65-67, 1996.

    181. J.H.Choi, J. Lee, W.W.Choi, J.S.Choi, B.G.Min, "Implementation of a Circuit for the Enhancement of Signal to Noise Ratio of Current Signal in the Electromechanical Total Artificial Heart", Proc. of KOSOME conference, vol.18, no.2, pp277-280, 1996.

    182. J. Lee, J.H.Choi, W.E.Kim, J.M.Ahn, B.G.Min, "A Study on Miniaturization of Digital Controller for both Total Artificial Heart & Ventricular Assist Device using PSD302", Proc. of KOSOMBE conference, vol.18, no.2, pp273-276, 1996.